NAMD
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Scalable Molecular Dynamics simulator. NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR. NAMD is distributed free of charge with source code. You can build NAMD yourself or download binaries for a wide variety of platforms.
NAMD runs on a variety of serial and parallel platforms. While it is trivial to launch a serial program, a parallel program depends on a platform-specific library such as MPI to launch copies of itself on other nodes and to provide access to a high performance network such as Myrinet or InfiniBand if one is available.
NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD is distributed free of charge and includes source code.
The license of this software is Freeware, you can free download and free use this 3d graphic software.