Voroprot
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An interactive tool for the analysis and visualization of complex geometric features of protein structure. Voroprot provides a unique set of capabilities for exploring geomeric features of protein structure. Voroprot allows the construction and visualization of the Apollonius diagram (also known as additively weighted Voronoi diagram), the Apollonius graph, protein alpha shapes, interatomic contact surfaces, solvent accessible surfaces, pockets and cavities inside protein structure.
The ability to analyze and visualize geometric features of three-dimensional (3D) protein structure is fundamental for studies of protein folding, residue packing, docking, protein-protein interactions, etc. Some of the advanced geometric data structures make it possible to perform such an analysis in a comprehensive manner.
The software is written in C++ using Qt framework, 3D rendering is implemented using OpenGL. Voroprot is a standalone application with an easy setup, not a plug-in for other visualization software.
The license of this software is Free, you can free download and free use this 3d graphic software.