GeneDoc
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GeneDoc is a Full Featured Multiple Sequence Alignment Editor, Analyser and Shading Utility for Windows.
GeneDoc Features:
1. Data Analysis and Visualization.
2. Score assisted manual alignment.
3. Paginated Printouts.
4. Windows Based.
5. Highly Configurable.
6. Exported Figures.
7. Phylogenetic Tree support.
GeneDoc installs as a regular windows program, into a GeneDoc program group. After starting GeneDoc, use file open and read in a MSF (Multiple Sequence File) file. GeneDoc saves configuration information for these files in the comment section of the MSF, so if the file was saved by GeneDoc, then it will be reopened with the same settings it was last saved with.
The license of this software is Freeware, you can free download and free use this calculator software.