Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses. Haploview currently supports the following functionalities:
1. LD & haplotype block analysis
2. haplotype population frequency estimation
3. single SNP and haplotype association tests
4. permutation testing for association significance
5. implementation of Paul de Bakkers Tagger tag SNP selection algorithm.
6. automatic download of phased genotype data from HapMap
7. visualization and plotting of PLINK whole genome association results including advanced filtering options.

Requirements:
* Java

The license of this software is Free, you can free download and free use this calculator software.