Analyze EMBL files fast and easy. JMotifFinder offer users a graphical utility to find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and mRNA within the source sequence. You can search for a motif via the search Button and JMotifFinder will search in the source sequence as well as in the mRNA sequence for your motif.
This application also searches automatically for the reverse motif, which becomes handy if you want to locate a Primer which fits to the reverse strand. In addition to the graphical Visualisation of the sequences, JMotifFinder builds a tree structure of the motifs you were looking for, displaying the location in the underlying source sequence as well as the location within the mRNA Sequence. If you print the mRNA, the Location of the motifs will be underlined in the mRNA sequence.

Requirements:
* Java

The license of this software is Freeware, you can free download and free use this calculator software.