LogoBar
|
Display protein sequence logos with this tool. LogoBar is a Java application to display protein sequence logos. With this application you can generate protein sequence logos from multiple sequence alignments
on your own computer, and you will get an additional output file that shows the amino acid incidence
at every position of the multiple sequence alignment.
LogoBar Features:
1. the frequency of the residues at particular positions is represented with colored bars.
2. amino acids can be placed into groups (e.g., to have similar amino acids in the same group) according
3. to the users own choice.
4. bars can be sorted according to groups, so similar amino acids will be placed together in the bar graph.
5. gaps are taken into account and also displayed in the logo.
6. Parameter changes on a loaded multiple sequence alignment are visualized quickly since LogoBar is
7. a Java application running on your local computer.
Requirements:
* Java
The license of this software is Free, you can free download and free use this calculator software.