USeq can help you to make sequencing data analysis. Applications for analyzing next generation sequencing data from Illumina, SOLiD, and 454 platforms. ChIP-seq, RNA-seq, Bis-seq, re-sequencing, SNP INDELs, capture array design tools, IGB/ DAS2 graph manipulation tools. GUI and cmd line interface.

USeq is a collection of software tools for for both low and high level analysis of next generation, ultra high throughput signature sequencing data from the Solexa, SOLiD, and 454 platforms. Initial emphasis: chIP-seq and RNA-Seq with FDR estimations. USeq is under continuous development at the Huntsman Cancer Institute in the Utah Bioinformatics Shared Resource Center.

Requirements:
* Java
* R with Storeys Q-Value and Anders DESeq libraries.

The license of this software is Free, you can free download and free use this calculator software.