Phylogenetic tree based contig arrangement tool. treecat can take several genomes and their relationships in a phylogenetic tree into account to estimate a possible ordering of the contigs.
A so called layout graph shows the unique order where possible and gives alternatives where necessary. The layout graph is calculated based on the matches to several related genomes as well as the information given by a phylogenetic tree of the involved species.

Please Note: this program is a Java Web Start Application, you need to right-click on the download file and choose "Launch".

Requirements:
* Java
* Internet Connection

The license of this software is Freeware, you can free download and free use this calculator software.